HL_2OTJ_005

3D structure

PDB id

2OTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

13-deoxytedanolide bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUCGCG

Length

7 nucleotides

Bulged bases

2OTJ|1|0|U|138, 2OTJ|1|0|C|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OTJ_005 not in the Motif Atlas

Homologous match to HL_4V9F_005

Geometric discrepancy: 0.0728

The information below is about HL_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13184.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

2OTJ|1|0|C|136
2OTJ|1|0|U|137
2OTJ|1|0|U|138
2OTJ|1|0|C|139
2OTJ|1|0|G|140
2OTJ|1|0|C|141
2OTJ|1|0|G|142

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15e