HL_2OTJ_068

3D structure

PDB id

2OTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

13-deoxytedanolide bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

2OTJ|1|0|G|2786, 2OTJ|1|0|C|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OTJ_068 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.0439

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

2OTJ|1|0|C|2780
2OTJ|1|0|U|2781
2OTJ|1|0|G|2782
2OTJ|1|0|A|2783
2OTJ|1|0|A|2784
2OTJ|1|0|C|2785
2OTJ|1|0|G|2786
2OTJ|1|0|C|2787
2OTJ|1|0|A|2788
2OTJ|1|0|U|2789
2OTJ|1|0|C|2790
2OTJ|1|0|U|2791
2OTJ|1|0|A|2792
2OTJ|1|0|A|2793
2OTJ|1|0|G|2794

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P