HL_2OTL_010

3D structure

PDB id

2OTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Girodazole bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

2OTL|1|0|C|318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OTL_010 not in the Motif Atlas

Homologous match to HL_4V9F_010

Geometric discrepancy: 0.0451

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

2OTL|1|0|U|312
2OTL|1|0|U|313
2OTL|1|0|G|314
2OTL|1|0|G|315
2OTL|1|0|A|316
2OTL|1|0|A|317
2OTL|1|0|C|318
2OTL|1|0|A|319

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain T

50S ribosomal protein L24P

Chain Y

50S ribosomal protein L32e