HL_2OTL_057

3D structure

PDB id

2OTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Girodazole bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAC

Length

4 nucleotides

Bulged bases

2OTL|1|0|G|2344

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OTL_057 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3228

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

2OTL|1|0|G|2338
2OTL|1|0|G|2344
2OTL|1|0|A|2345
2OTL|1|0|C|2346

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5P