HL_2OTL_059

3D structure

PDB id

2OTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Girodazole bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UUCCCAACGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OTL_059 not in the Motif Atlas

Homologous match to HL_4V9F_059

Geometric discrepancy: 0.0433

The information below is about HL_4V9F_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

2OTL|1|0|U|2389
2OTL|1|0|U|2390
2OTL|1|0|C|2391
2OTL|1|0|C|2392
2OTL|1|0|C|2393
2OTL|1|0|A|2394
2OTL|1|0|A|2395
2OTL|1|0|C|2396
2OTL|1|0|G|2397
2OTL|1|0|A|2398
2OTL|1|0|G|2399

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain L

50S ribosomal protein L15P

Chain Q

50S ribosomal protein L21e