HL_2OTL_063

3D structure

PDB id

2OTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Girodazole bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGCAGAAG

Length

8 nucleotides

Bulged bases

2OTL|1|0|G|2564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OTL_063 not in the Motif Atlas

Homologous match to HL_4V9F_063

Geometric discrepancy: 0.0428

The information below is about HL_4V9F_063

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

2OTL|1|0|U|2563
2OTL|1|0|G|2564
2OTL|1|0|C|2565
2OTL|1|0|A|2566
2OTL|1|0|G|2567
2OTL|1|0|A|2568
2OTL|1|0|A|2569
2OTL|1|0|G|2570

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6P