Motif HL_46665.2 Version HL_46665.2 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V9F_063 | 4V9F | 0.1884 | 1 | GNRA variation | 0 | LSU rRNA | U | 2563 | C | 2565 | A | 2566 | G | 2567 | A | 2568 | A | 2569 | G | 2570 | cWW | |
| 2 | HL_7A0S_060 | 7A0S | 0.1532 | 1 | GNRA variation | X | LSU rRNA | U | 2507 | A | 2509 | A | 2510 | G | 2511 | A | 2512 | A | 2513 | G | 2514 | cWW | |
| 3 | HL_4WF9_057 | 4WF9 | 0.2076 | 1 | GNRA variation | X | LSU rRNA | U | 2555 | U | 2557 | A | 2558 | G | 2559 | U | 2560 | C | 2561 | G | 2562 | cWW | |
| 4 | HL_9E6Q_059 | 9E6Q | 0.1533 | 1 | GNRA variation (H) | 1 | LSU rRNA | U | 2642 | C | 2644 | A | 2645 | G | 2646 | C | 2647 | A | 2648 | G | 2649 | cWW | |
| 5 | HL_8B0X_088 | 8B0X | 0.1624 | 1 | GNRA variation (H) | a | LSU rRNA | U | 2532 | A | 2534 | A | 2535 | G | 2536 | U | 2537 | A | 2538 | G | 2539 | cWW | |
| 6 | HL_9DFE_059 | 9DFE | 0.1670 | 1 | GNRA variation | 1A | LSU rRNA | U | 2528 | A | 2530 | A | 2531 | G | 2532 | A | 2533 | A | 2534 | G | 2535 | cWW | |
| 7 | HL_8GLP_067 | 8GLP | 0.0000 | 1 | L5 | LSU rRNA | A | 4474 | C | 4476 | A | 4477 | G | 4478 | A | 4479 | A | 4480 | U | 4481 | cWW | ||
| 8 | HL_8P9A_173 | 8P9A | 0.0884 | 1 | GNRA variation | AR | LSU rRNA | A | 2897 | C | 2899 | A | 2900 | G | 2901 | A | 2902 | A | 2903 | U | 2904 | cWW | |
| 9 | HL_8OI5_058 | 8OI5 | 0.0937 | 1 | 1 | LSU rRNA | A | 2869 | C | 2871 | A | 2872 | G | 2873 | A | 2874 | A | 2875 | U | 2876 | cWW | ||
| 10 | HL_9M86_002 | 9M86 | 0.3490 | 0 | D | RNA (31-MER) | U | 58 | G | 59 | C | 60 | A | 61 | C | 62 | A | 63 | A | 64 | cWW | tSH | |
| 11 | HL_4LFB_002 | 4LFB | 0.3627 | 0 | A | SSU rRNA | G | 80 | U | 81 | U | 82 | U | 83 | U | 84 | A | 88 | C | 89 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGCAGAAU | 3 |
| UGAAGAAG | 2 |
| UGCAGAAG | 1 |
| UGUAGUCG | 1 |
| UGCAGCAG | 1 |
| UGAAGUAG | 1 |
| UGCACAA | 1 |
| GUUUUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCAGAA | 4 |
| GAAGAA | 2 |
| GUAGUC | 1 |
| GCAGCA | 1 |
| GAAGUA | 1 |
| GCACA | 1 |
| UUUUA | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- GNRA variation (5)
- (4)
- GNRA variation (H) (2)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.22 | Max 0.49
Coloring options: