HL_2OTL_068

3D structure

PDB id

2OTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Girodazole bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

2OTL|1|0|G|2786, 2OTL|1|0|C|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OTL_068 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.0369

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.1

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

2OTL|1|0|C|2780
2OTL|1|0|U|2781
2OTL|1|0|G|2782
2OTL|1|0|A|2783
2OTL|1|0|A|2784
2OTL|1|0|C|2785
2OTL|1|0|G|2786
2OTL|1|0|C|2787
2OTL|1|0|A|2788
2OTL|1|0|U|2789
2OTL|1|0|C|2790
2OTL|1|0|U|2791
2OTL|1|0|A|2792
2OTL|1|0|A|2793
2OTL|1|0|G|2794

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P