HL_2QA4_016

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCAGAAG

Length

7 nucleotides

Bulged bases

2QA4|1|0|A|497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2QA4_016 not in the Motif Atlas

Homologous match to HL_4V9F_016

Geometric discrepancy: 0.1418

The information below is about HL_4V9F_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

2QA4|1|0|U|493
2QA4|1|0|C|494
2QA4|1|0|A|495
2QA4|1|0|G|496
2QA4|1|0|A|497
2QA4|1|0|A|498
2QA4|1|0|G|499

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain R

50S ribosomal protein L22P