HL_2QA4_029

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2QA4_029 not in the Motif Atlas

Homologous match to HL_4V9F_029

Geometric discrepancy: 0.089

The information below is about HL_4V9F_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

2QA4|1|0|G|1076
2QA4|1|0|G|1077
2QA4|1|0|A|1078
2QA4|1|0|A|1079
2QA4|1|0|C|1080
2QA4|1|0|A|1081
2QA4|1|0|A|1082
2QA4|1|0|C|1083

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain W

50S ribosomal protein L30P

Chain Y

50S ribosomal protein L32e