HL_2QA4_068

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

2QA4|1|0|G|2786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2QA4_068 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.065

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

2QA4|1|0|C|2780
2QA4|1|0|U|2781
2QA4|1|0|G|2782
2QA4|1|0|A|2783
2QA4|1|0|A|2784
2QA4|1|0|C|2785
2QA4|1|0|G|2786
2QA4|1|0|C|2787
2QA4|1|0|A|2788
2QA4|1|0|U|2789
2QA4|1|0|C|2790
2QA4|1|0|U|2791
2QA4|1|0|A|2792
2QA4|1|0|A|2793
2QA4|1|0|G|2794

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P