HL_2QA4_075

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

U(OMU)(OMG)UUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2QA4_075 not in the Motif Atlas

Homologous match to HL_4V9F_073

Geometric discrepancy: 0.0778

The information below is about HL_4V9F_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

2QA4|1|0|U|2586
2QA4|1|0|OMU|2587
2QA4|1|0|OMG|2588
2QA4|1|0|U|2589
2QA4|1|0|U|2590
2QA4|1|0|C|2591
2QA4|1|0|G|2592

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P