HL_2QBG_056

3D structure

PDB id

2QBG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). This file contains the 50S subunit of the second 70S ribosome, with RRF bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

2QBG|1|B|A|2268, 2QBG|1|B|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41833.7

Basepair signature

cWW-tSH-tHH-tWW-R-R-R

Number of instances in this motif group

10

Unit IDs

2QBG|1|B|C|2264
2QBG|1|B|U|2265
2QBG|1|B|A|2266
2QBG|1|B|A|2267
2QBG|1|B|A|2268
2QBG|1|B|G|2269
2QBG|1|B|A|2270
2QBG|1|B|G|2271
2QBG|1|B|U|2272
2QBG|1|B|A|2273
2QBG|1|B|A|2274
2QBG|1|B|C|2275
2QBG|1|B|G|2276

Current chains

Chain B

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27