2QBG Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2QBG_001 | 1/A/38:44 | No text annotation | geometric HL_4V9F_071 HL_47787.2 | |
| HL_2QBG_002 | 1/A/86:90 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_2QBG_003 | 1/B/59:68 | Pseudoknot with intercalation | geometric HL_4V9F_001 HL_93438.2 | |
| HL_2QBG_004 | 1/B/87:95 | No text annotation | geometric HL_5J7L_135 HL_80241.1 | |
| HL_2QBG_005 | 1/B/123:128 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_2QBG_006 | 1/B/137:142 | No text annotation | ||
| HL_2QBG_007 | 1/B/158:168 | No text annotation | geometric HL_5J7L_138 HL_68257.1 | |
| HL_2QBG_008 | 1/B/194:201 | No text annotation | geometric HL_5J7L_139 HL_30068.2 | |
| HL_2QBG_009 | 1/B/225:230 | No text annotation | geometric HL_5J7L_140 HL_62934.1 | |
| HL_2QBG_010 | 1/B/246:252 | No text annotation | geometric HL_5J7L_141 HL_37369.2 | |
| HL_2QBG_011 | 1/B/305:312 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_142 HL_01609.3 | |
| HL_2QBG_012 | 1/B/319:323 | No text annotation | geometric HL_7A0S_011 HL_75660.5 | |
| HL_2QBG_013 | 1/B/327:335 | T-loop with unstacked turn | geometric HL_5J7L_144 HL_27670.2 | |
| HL_2QBG_014 | 1/B/382:392 | No text annotation | geometric HL_5J7L_145 HL_91503.7 | |
| HL_2QBG_015 | 1/B/410:417 | Pseudoknot geometry | geometric HL_5J7L_146 HL_30680.3 | |
| HL_2QBG_016 | 1/B/462:467 | GNRA | geometric HL_7RQB_015 NA | |
| HL_2QBG_017 | 1/B/487:493 | GNRA | geometric HL_5J7L_148 HL_37824.8 | |
| HL_2QBG_018 | 1/B/543:550 | No text annotation | ||
| HL_2QBG_019 | 1/B/566:575 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 HL_28252.9 | |
| HL_2QBG_020 | 1/B/611:617 | No text annotation | geometric HL_7Z4O_002 HL_49922.4 | |
| HL_2QBG_021 | 1/B/629:634 | GNRA | geometric HL_5J7L_152 HL_37824.8 | |
| HL_2QBG_022 | 1/B/641:647 | GNRA | geometric HL_1U9S_001 HL_37824.8 | |
| HL_2QBG_023 | 1/B/712:719 | GNRA wlth tandem sheared | geometric HL_5J7L_154 HL_81538.2 | |
| HL_2QBG_024 | 1/B/744:753 | No text annotation | geometric HL_4WF9_023 HL_88205.2 | |
| HL_2QBG_025 | 1/B/779:785 | No text annotation | geometric HL_7A0S_023 HL_53890.2 | |
| HL_2QBG_026 | 1/B/826:831 | No text annotation | geometric HL_7RQB_025 NA | |
| HL_2QBG_028 | 1/B/955:962 | GNRA | geometric HL_4WF9_027 HL_37824.8 | |
| HL_2QBG_029 | 1/B/978:985 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_2QBG_030 | 1/B/1064:1074 | No text annotation | geometric HL_1MMS_001 HL_19210.3 | |
| HL_2QBG_031 | 1/B/1092:1099 | GNRA wlth tandem sheared | geometric HL_6PRV_002 HL_81538.2 | |
| HL_2QBG_032 | 1/B/1172:1177 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_2QBG_033 | 1/B/1222:1227 | GNRA | geometric HL_5J7L_164 HL_37824.8 | |
| HL_2QBG_034 | 1/B/1281:1289 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_165 HL_28252.9 | |
| HL_2QBG_035 | 1/B/1324:1330 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_166 HL_57176.2 | |
| HL_2QBG_036 | 1/B/1363:1368 | GNRA | geometric HL_5J7L_167 HL_37824.8 | |
| HL_2QBG_037 | 1/B/1389:1398 | No text annotation | geometric HL_5J7L_168 HL_81545.2 | |
| HL_2QBG_038 | 1/B/1449:1462 | No text annotation | ||
| HL_2QBG_039 | 1/B/1492:1498 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_170 HL_57176.2 | |
| HL_2QBG_040 | 1/B/1533:1538 | UNCG | geometric HL_4LFB_011 HL_34617.5 | |
| HL_2QBG_041 | 1/B/1565:1568 | Mini UNCG | geometric HL_5J7L_172 HL_48778.2 | |
| HL_2QBG_042 | 1/B/1612:1619 | No text annotation | geometric HL_7RQB_040 NA | |
| HL_2QBG_043 | 1/B/1630:1636 | GNRA | geometric HL_5J7L_174 HL_37824.8 | |
| HL_2QBG_044 | 1/B/1691:1696 | UNCG | geometric HL_5J7L_175 HL_34617.5 | |
| HL_2QBG_045 | 1/B/1728:1731 | No text annotation | ||
| HL_2QBG_046 | 1/B/1752:1756 | No text annotation | geometric HL_7RQB_044 NA | |
| HL_2QBG_047 | 1/B/1777:1787 | No text annotation | geometric HL_5J7L_178 HL_01962.2 | |
| HL_2QBG_048 | 1/B/1806:1811 | GNRA related | geometric HL_3OXE_002 HL_04783.2 | |
| HL_2QBG_049 | 1/B/1868:1873 | GNRA variation | geometric HL_5J7L_180 HL_37824.8 | |
| HL_2QBG_050 | 1/B/1910:1920 | No text annotation | geometric HL_9DFE_046 HL_25847.2 | |
| HL_2QBG_051 | 1/B/1949:1957 | No text annotation | geometric HL_5J7L_182 HL_20167.2 | |
| HL_2QBG_052 | 1/B/2027:2036 | No text annotation | geometric HL_4WF9_047 HL_61996.3 | |
| HL_2QBG_053 | 1/B/2142:2149 | No text annotation | ||
| HL_2QBG_054 | 1/B/2209:2215 | No text annotation | geometric HL_5J7L_185 HL_49922.4 | |
| HL_2QBG_055 | 1/B/2248:2256 | No text annotation | geometric HL_4WF9_049 HL_85367.2 | |
| HL_2QBG_056 | 1/B/2264:2276 | No text annotation | geometric HL_5J7L_187 HL_91939.2 | |
| HL_2QBG_058 | 1/B/2324:2331 | Pseudoknot geometry | geometric HL_5J7L_189 HL_93324.4 | |
| HL_2QBG_059 | 1/B/2356:2361 | GNRA | geometric HL_5J7L_190 HL_37824.8 | |
| HL_2QBG_060 | 1/B/2374:2379 | GNRA | geometric HL_7RQB_058 NA | |
| HL_2QBG_061 | 1/B/2404:2413 | No text annotation | geometric HL_5J7L_192 HL_53454.2 | |
| HL_2QBG_062 | 1/B/2471:2479 | No text annotation | geometric HL_5J7L_193 HL_32735.2 | |
| HL_2QBG_063 | 1/B/2528:2535 | No text annotation | geometric HL_5J7L_194 HL_31585.4 | |
| HL_2QBG_064 | 1/B/2551:2557 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_2QBG_065 | 1/B/2594:2599 | GNRA | geometric HL_4V9F_065 HL_37824.8 | |
| HL_2QBG_066 | 1/B/2658:2663 | GNRA related | geometric HL_5J7L_179 HL_04783.2 | |
| HL_2QBG_067 | 1/B/2701:2706 | Ribsomal LSU H95 | geometric HL_5J7L_198 HL_65794.5 | |
| HL_2QBG_068 | 1/B/2745:2759 | No text annotation | geometric HL_5J7L_199 HL_74055.2 | |
| HL_2QBG_069 | 1/B/2796:2800 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_2QBG_070 | 1/B/2819:2827 | No text annotation | geometric HL_5J7L_201 HL_64690.6 | |
| HL_2QBG_071 | 1/B/2856:2861 | GNRA | geometric HL_7A0S_068 HL_37824.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_2QBG_027 | No text annotation | ||
| HL_2QBG_057 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_2QBG_001 | 1/A/17:18, 1/A/65:67 | Major groove intercalation | geometric IL_5J7L_355 IL_31462.7 | |
| IL_2QBG_002 | 1/A/23:28, 1/A/56:60 | No text annotation | geometric IL_7A0S_103 IL_18472.4 | |
| IL_2QBG_003 | 1/A/30:31, 1/A/51:54 | No text annotation | geometric IL_8VTW_072 NA | |
| IL_2QBG_004 | 1/A/34:38, 1/A/44:48 | Symmetric double minor groove platform | geometric IL_5J7L_358 IL_58103.11 | |
| IL_2QBG_005 | 1/A/71:79, 1/A/97:105 | Bacterial 5S Loop E | geometric IL_5J7L_359 IL_56455.6 | |
| IL_2QBG_006 | 1/B/24:30, 1/B/510:516 | Triple sheared with non-canonical cWW | geometric IL_5J7L_245 IL_04021.2 | |
| IL_2QBG_007 | 1/B/36:37, 1/B/442:444 | Single bulged A | geometric IL_5J7L_246 IL_31462.7 | |
| IL_2QBG_008 | 1/B/43:44, 1/B/434:436 | Minor groove platform | geometric IL_5J7L_247 IL_51454.3 | |
| IL_2QBG_009 | 1/B/81:85, 1/B/97:105 | No text annotation | ||
| IL_2QBG_010 | 1/B/183:184, 1/B/212:214 | Single stack bend | geometric IL_5J7L_249 IL_90729.1 | |
| IL_2QBG_011 | 1/B/188:194, 1/B/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 IL_04346.10 | |
| IL_2QBG_012 | 1/B/239:245, 1/B/253:258 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_5J7L_251 IL_26307.2 | |
| IL_2QBG_013 | 1/B/269:271, 1/B/366:370 | No text annotation | geometric IL_5J7L_252 IL_47972.1 | |
| IL_2QBG_014 | 1/B/274:281, 1/B/359:363 | No text annotation | geometric IL_5J7L_253 IL_77870.1 | |
| IL_2QBG_015 | 1/B/293:295, 1/B/343:347 | No text annotation | geometric IL_4WF9_014 IL_69440.3 | |
| IL_2QBG_016 | 1/B/481:484, 1/B/496:509 | No text annotation | geometric IL_5J7L_255 IL_81516.2 | |
| IL_2QBG_017 | 1/B/536:539, 1/B/554:557 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
| IL_2QBG_018 | 1/B/564:566, 1/B/575:577 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_07785.1 | |
| IL_2QBG_019 | 1/B/606:610, 1/B/618:622 | AAA cross-strand stack | geometric IL_5J7L_258 IL_66798.2 | |
| IL_2QBG_020 | 1/B/672:674, 1/B/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_2QBG_021 | 1/B/674:678, 1/B/799:806 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 IL_54041.2 | |
| IL_2QBG_022 | 1/B/697:698, 1/B/763:765 | Single bulged A | geometric IL_5J7L_261 IL_31462.7 | |
| IL_2QBG_023 | 1/B/702:703, 1/B/728:730 | Single bulged G | geometric IL_5J7L_262 IL_00225.14 | |
| IL_2QBG_024 | 1/B/703:707, 1/B/724:728 | Triple sheared | geometric IL_5J7L_263 IL_50730.2 | |
| IL_2QBG_025 | 1/B/738:740, 1/B/757:758 | Major groove platform | geometric IL_5J7L_264 IL_48076.6 | |
| IL_2QBG_026 | 1/B/775:777, 1/B/787:791 | Multiple bulged bases | geometric IL_5J7L_265 IL_06549.2 | |
| IL_2QBG_027 | 1/B/837:838, 1/B/940:942 | Single stack bend | geometric IL_4WF9_028 IL_90729.1 | |
| IL_2QBG_028 | 1/B/844:848, 1/B/930:934 | No text annotation | geometric IL_5J7L_399 IL_96236.1 | |
| IL_2QBG_029 | 1/B/850:851, 1/B/926:928 | Single stack bend | geometric IL_5J7L_269 IL_26793.1 | |
| IL_2QBG_030 | 1/B/856:858, 1/B/919:921 | Isolated non-canonical cWW pair | geometric IL_4V88_472 NA | |
| IL_2QBG_031 | 1/B/858:862, 1/B/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_4V9F_033 IL_38862.4 | |
| IL_2QBG_032 | 1/B/862:863, 1/B/913:915 | Single bulged G | geometric IL_5J7L_271 IL_00225.14 | |
| IL_2QBG_033 | 1/B/864:868, 1/B/909:912 | C-loop | geometric IL_5J7L_272 IL_26222.2 | |
| IL_2QBG_034 | 1/B/870:872, 1/B/905:907 | Isolated non-canonical cWW pair | geometric IL_5J7L_273 IL_28037.2 | |
| IL_2QBG_035 | 1/B/994:996, 1/B/1159:1160 | Single bulged C | geometric IL_5J7L_276 IL_61258.15 | |
| IL_2QBG_036 | 1/B/998:1002, 1/B/1153:1157 | UAA/GAN | geometric IL_5J7L_277 IL_38507.2 | |
| IL_2QBG_037 | 1/B/1004:1011, 1/B/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
| IL_2QBG_038 | 1/B/1011:1013, 1/B/1149:1150 | Single bulged U | geometric IL_5J7L_279 IL_89505.4 | |
| IL_2QBG_039 | 1/B/1018:1024, 1/B/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_2QBG_040 | 1/B/1031:1034, 1/B/1121:1123 | Isolated non-canonical cWW pair | geometric IL_5J7L_282 IL_57744.1 | |
| IL_2QBG_041 | 1/B/1038:1041, 1/B/1114:1117 | Tandem non-canonical cWW pairs | geometric IL_5J7L_283 IL_85033.2 | |
| IL_2QBG_042 | 1/B/1043:1051, 1/B/1108:1112 | Kink-turn | geometric IL_5J7L_284 IL_99692.2 | |
| IL_2QBG_043 | 1/B/1059:1062, 1/B/1076:1079 | No text annotation | geometric IL_1MMS_001 IL_92446.2 | |
| IL_2QBG_044 | 1/B/1087:1090, 1/B/1101:1102 | Major groove platform | geometric IL_4V9F_044 IL_48076.6 | |
| IL_2QBG_045 | 1/B/1196:1198, 1/B/1247:1250 | Isolated cWS basepair | geometric IL_5J7L_286 IL_42997.3 | |
| IL_2QBG_046 | 1/B/1202:1206, 1/B/1240:1243 | No text annotation | geometric IL_5J7L_287 IL_91920.1 | |
| IL_2QBG_047 | 1/B/1208:1215, 1/B/1234:1238 | Kink-turn | geometric IL_7RQB_047 NA | |
| IL_2QBG_048 | 1/B/1262:1269, 1/B/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_289 IL_04346.10 | |
| IL_2QBG_049 | 1/B/1310:1313, 1/B/1603:1604 | Major groove platform; stack outside cWW | geometric IL_7RQB_050 NA | |
| IL_2QBG_050 | 1/B/1319:1323, 1/B/1331:1333 | C-loop | geometric IL_5J7L_291 IL_63596.11 | |
| IL_2QBG_051 | 1/B/1351:1355, 1/B/1376:1380 | UAA/GAN | geometric IL_5J7L_292 IL_89021.2 | |
| IL_2QBG_052 | 1/B/1357:1361, 1/B/1370:1374 | tSH-tHW-tHS | geometric IL_5J7L_293 IL_17136.7 | |
| IL_2QBG_053 | 1/B/1415:1416, 1/B/1582:1587 | No text annotation | geometric IL_5J7L_294 IL_87211.1 | |
| IL_2QBG_054 | 1/B/1417:1421, 1/B/1577:1581 | UAA/GAN | geometric IL_7RQB_055 NA | |
| IL_2QBG_055 | 1/B/1432:1435, 1/B/1557:1561 | Tandem non-canonical cWW pairs | geometric IL_5J7L_296 IL_58112.2 | |
| IL_2QBG_056 | 1/B/1437:1440, 1/B/1551:1555 | No text annotation | ||
| IL_2QBG_057 | 1/B/1468:1471, 1/B/1520:1524 | No text annotation | geometric IL_5J7L_299 IL_68574.4 | |
| IL_2QBG_058 | 1/B/1474:1478, 1/B/1513:1517 | tSH-tHW-tHS | geometric IL_5J7L_300 IL_38862.4 | |
| IL_2QBG_059 | 1/B/1481:1482, 1/B/1507:1510 | No text annotation | ||
| IL_2QBG_060 | 1/B/1489:1491, 1/B/1499:1500 | Single bulged A | geometric IL_5J7L_302 IL_31462.7 | |
| IL_2QBG_061 | 1/B/1526:1529, 1/B/1542:1546 | UAA/GAN variation | geometric IL_5J7L_303 IL_23774.1 | |
| IL_2QBG_062 | 1/B/1651:1656, 1/B/2004:2006 | No text annotation | geometric IL_5J7L_304 IL_12566.4 | |
| IL_2QBG_063 | 1/B/1663:1665, 1/B/1995:1997 | Isolated tWW turn | geometric IL_4WF9_063 IL_67095.2 | |
| IL_2QBG_064 | 1/B/1666:1669, 1/B/1993:1994 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_2QBG_065 | 1/B/1669:1674, 1/B/1990:1993 | Intercalated tWH | geometric IL_5J7L_307 IL_76758.2 | |
| IL_2QBG_066 | 1/B/1686:1691, 1/B/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 IL_47346.2 | |
| IL_2QBG_067 | 1/B/1712:1718, 1/B/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_5J7L_309 IL_88269.4 | |
| IL_2QBG_068 | 1/B/1720:1724, 1/B/1736:1740 | Triple sheared | geometric IL_5J7L_310 IL_50730.2 | |
| IL_2QBG_069 | 1/B/1727:1728, 1/B/1731:1733 | Single bulged C | geometric IL_5J7L_311 IL_61258.15 | |
| IL_2QBG_070 | 1/B/1770:1771, 1/B/1980:1982 | Single bulged A | geometric IL_5J7L_312 IL_31462.7 | |
| IL_2QBG_071 | 1/B/1798:1804, 1/B/1813:1821 | Kink-turn related | geometric IL_5J7L_313 IL_17069.5 | |
| IL_2QBG_072 | 1/B/1837:1840, 1/B/1902:1903 | Minor groove platform, major groove intercalation | geometric IL_5J7L_314 IL_95583.2 | |
| IL_2QBG_073 | 1/B/1841:1842, 1/B/1898:1901 | Major groove intercalation | geometric IL_5J7L_315 IL_82107.5 | |
| IL_2QBG_074 | 1/B/1846:1849, 1/B/1893:1894 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_2QBG_075 | 1/B/1864:1867, 1/B/1874:1878 | UAA/GAN variation | geometric IL_5J7L_317 IL_77691.5 | |
| IL_2QBG_076 | 1/B/1933:1934, 1/B/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.4 | |
| IL_2QBG_077 | 1/B/1934:1945, 1/B/1961:1964 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_2QBG_078 | 1/B/2050:2052, 1/B/2617:2618 | Major groove platform | geometric IL_5J7L_320 IL_48076.6 | |
| IL_2QBG_079 | 1/B/2054:2056, 1/B/2612:2615 | No text annotation | geometric IL_5J7L_321 IL_83389.2 | |
| IL_2QBG_080 | 1/B/2067:2069, 1/B/2442:2443 | Single bulged U | geometric IL_7A0S_075 IL_89505.4 | |
| IL_2QBG_081 | 1/B/2070:2071, 1/B/2438:2441 | Minor groove platform | geometric IL_5TBW_094 NA | |
| IL_2QBG_082 | 1/B/2081:2083, 1/B/2236:2239 | Isolated tHS basepair with bulges | geometric IL_5J7L_325 IL_85599.2 | |
| IL_2QBG_083 | 1/B/2085:2087, 1/B/2232:2234 | Isolated non-canonical cWW pair | geometric IL_5J7L_326 IL_28037.2 | |
| IL_2QBG_084 | 1/B/2103:2105, 1/B/2184:2186 | Decoding loop related | geometric IL_2O3X_003 IL_31737.3 | |
| IL_2QBG_085 | 1/B/2108:2110, 1/B/2179:2181 | No text annotation | ||
| IL_2QBG_086 | 1/B/2202:2204, 1/B/2220:2221 | Single bulged U | geometric IL_5J7L_331 IL_89505.4 | |
| IL_2QBG_087 | 1/B/2297:2299, 1/B/2317:2321 | No text annotation | ||
| IL_2QBG_088 | 1/B/2350:2353, 1/B/2364:2367 | Double sheared | geometric IL_7RQB_089 NA | |
| IL_2QBG_089 | 1/B/2401:2403, 1/B/2414:2415 | No text annotation | ||
| IL_2QBG_090 | 1/B/2453:2454, 1/B/2498:2500 | Single stack bend | geometric IL_4WF9_089 IL_26793.1 | |
| IL_2QBG_091 | 1/B/2454:2455, 1/B/2496:2498 | Major groove platform | geometric IL_4WF9_090 IL_48076.6 | |
| IL_2QBG_092 | 1/B/2457:2459, 1/B/2493:2494 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_2QBG_093 | 1/B/2459:2461, 1/B/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 IL_51387.3 | |
| IL_2QBG_094 | 1/B/2466:2470, 1/B/2480:2484 | Triple sheared | geometric IL_5J7L_338 IL_17948.2 | |
| IL_2QBG_095 | 1/B/2507:2508, 1/B/2580:2582 | Major groove platform | geometric IL_4WF9_094 IL_07039.3 | |
| IL_2QBG_096 | 1/B/2510:2512, 1/B/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 IL_07785.1 | |
| IL_2QBG_097 | 1/B/2512:2513, 1/B/2571:2574 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_2QBG_098 | 1/B/2522:2523, 1/B/2540:2543 | Major groove platform with intercalation | geometric IL_5J7L_342 IL_02555.1 | |
| IL_2QBG_099 | 1/B/2591:2592, 1/B/2601:2603 | Single bulged A | geometric IL_5J7L_344 IL_31462.7 | |
| IL_2QBG_100 | 1/B/2636:2640, 1/B/2774:2782 | tSH-tHS-tHW | geometric IL_5J7L_345 IL_04638.3 | |
| IL_2QBG_101 | 1/B/2652:2658, 1/B/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 IL_16458.4 | |
| IL_2QBG_102 | 1/B/2680:2684, 1/B/2725:2727 | C-loop | geometric IL_5J7L_347 IL_63596.11 | |
| IL_2QBG_103 | 1/B/2687:2691, 1/B/2718:2722 | No text annotation | geometric IL_5J7L_348 IL_23774.1 | |
| IL_2QBG_104 | 1/B/2695:2696, 1/B/2711:2714 | Multiple bulged bases | geometric IL_5J7L_349 IL_42626.2 | |
| IL_2QBG_105 | 1/B/2737:2742, 1/B/2762:2767 | UAA/GAN with extra cWW | geometric IL_5J7L_350 IL_49767.8 | |
| IL_2QBG_106 | 1/B/2806:2811, 1/B/2889:2892 | No text annotation | geometric IL_5J7L_351 IL_29471.1 | |
| IL_2QBG_107 | 1/B/2838:2839, 1/B/2878:2880 | Major groove intercalation | geometric IL_4WF9_112 IL_31462.7 | |
| IL_2QBG_108 | 1/B/2843:2846, 1/B/2870:2874 | Multiple bulged bases with non-canonical cWW | geometric IL_5J7L_353 IL_64231.5 | |
| IL_2QBG_109 | 1/B/2847:2852, 1/B/2865:2869 | No text annotation | geometric IL_7A0S_101 IL_70411.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_2QBG_001 | 1/A/10:16, 1/A/68:70, 1/A/106:110 | No text annotation | ||
| J3_2QBG_002 | 1/B/683:689, 1/B/773:775, 1/B/791:794 | No text annotation | geometric J3_5J7L_038 J3_64189.2 | |
| J3_2QBG_003 | 1/B/698:700, 1/B/732:736, 1/B/760:763 | No text annotation | geometric J3_5J7L_039 J3_44724.7 | |
| J3_2QBG_004 | 1/B/1055:1057, 1/B/1081:1087, 1/B/1102:1104 | No text annotation | geometric J3_1MMS_001 J3_28621.5 | |
| J3_2QBG_005 | 1/B/1298:1303, 1/B/1625:1627, 1/B/1639:1642 | No text annotation | geometric J3_5J7L_041 J3_32852.6 | |
| J3_2QBG_006 | 1/B/1306:1309, 1/B/1605:1611, 1/B/1620:1622 | No text annotation | geometric J3_7A0S_007 J3_71677.1 | |
| J3_2QBG_007 | 1/B/2091:2093, 1/B/2196:2200, 1/B/2223:2228 | Kink-turn in J3 | geometric J3_5J7L_044 J3_89368.5 | |
| J3_2QBG_008 | 1/B/2295:2297, 1/B/2321:2323, 1/B/2332:2337 | No text annotation | geometric J3_5J7L_045 J3_61124.2 | |
| J3_2QBG_009 | 1/B/2517:2520, 1/B/2545:2547, 1/B/2561:2567 | No text annotation | geometric J3_5J7L_046 J3_32601.5 | |
| J3_2QBG_010 | 1/B/2812:2815, 1/B/2831:2836, 1/B/2882:2888 | No text annotation | geometric J3_5J7L_048 J3_64069.1 |
Problematic loops
No problematic loops
Coloring options: