Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_2QBG_0011/A/38:44No text annotation
geometric
HL_4V9F_071
HL_59381.2
HL_2QBG_0021/A/86:90No text annotation
geometric
HL_1WZ2_007
HL_75660.7
HL_2QBG_0031/B/59:68Pseudoknot with intercalation
geometric
HL_4V9F_001
HL_17803.1
HL_2QBG_0041/B/87:95No text annotation
geometric
HL_5J7L_135
NA
HL_2QBG_0051/B/123:128No text annotation
geometric
HL_4WF9_003
HL_75660.7
HL_2QBG_0061/B/137:142No text annotation
HL_2QBG_0071/B/158:168No text annotation
geometric
HL_5J7L_138
NA
HL_2QBG_0081/B/194:201No text annotation
geometric
HL_5J7L_139
NA
HL_2QBG_0091/B/225:230No text annotation
geometric
HL_5J7L_140
NA
HL_2QBG_0101/B/246:252No text annotation
geometric
HL_5J7L_141
NA
HL_2QBG_0111/B/305:312T-loop with 2 stacked bulged bases
geometric
HL_5J7L_142
NA
HL_2QBG_0121/B/319:323No text annotation
geometric
HL_7A0S_011
HL_75660.7
HL_2QBG_0131/B/327:335T-loop with unstacked turn
geometric
HL_5J7L_144
NA
HL_2QBG_0141/B/382:392No text annotation
geometric
HL_5J7L_145
NA
HL_2QBG_0151/B/410:417Pseudoknot geometry
geometric
HL_5J7L_146
NA
HL_2QBG_0161/B/462:467GNRA
geometric
HL_7RQB_015
NA
HL_2QBG_0171/B/487:493GNRA
geometric
HL_5J7L_148
NA
HL_2QBG_0181/B/543:550No text annotation
HL_2QBG_0191/B/566:575T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
NA
HL_2QBG_0201/B/611:617No text annotation
geometric
HL_7Z4O_002
HL_19413.2
HL_2QBG_0211/B/629:634GNRA
geometric
HL_5J7L_152
NA
HL_2QBG_0221/B/641:647GNRA
geometric
HL_1U9S_001
HL_07380.1
HL_2QBG_0231/B/712:719GNRA wlth tandem sheared
geometric
HL_5J7L_154
NA
HL_2QBG_0241/B/744:753No text annotation
geometric
HL_4WF9_023
HL_50204.1
HL_2QBG_0251/B/779:785UNCG variation
geometric
HL_7A0S_023
HL_51020.2
HL_2QBG_0261/B/826:831No text annotation
geometric
HL_7RQB_025
NA
HL_2QBG_0281/B/955:962GNRA
geometric
HL_4WF9_027
HL_34789.2
HL_2QBG_0291/B/978:985No text annotation
geometric
HL_5TBW_006
NA
HL_2QBG_0301/B/1064:1074No text annotation
geometric
HL_1MMS_001
NA
HL_2QBG_0311/B/1092:1099GNRA wlth tandem sheared
geometric
HL_6PRV_002
HL_98423.2
HL_2QBG_0321/B/1172:1177No text annotation
geometric
HL_5J7L_151
NA
HL_2QBG_0331/B/1222:1227GNRA
geometric
HL_5J7L_164
NA
HL_2QBG_0341/B/1281:1289T-loop with 2 stacked bulged bases
geometric
HL_5J7L_165
NA
HL_2QBG_0351/B/1324:1330Pseudoknot geometry with 3' bulge
geometric
HL_5J7L_166
NA
HL_2QBG_0361/B/1363:1368GNRA
geometric
HL_5J7L_167
NA
HL_2QBG_0371/B/1389:1398No text annotation
geometric
HL_5J7L_168
NA
HL_2QBG_0381/B/1449:1462No text annotation
HL_2QBG_0391/B/1492:1498Pseudoknot geometry with 3' bulge
geometric
HL_5J7L_170
NA
HL_2QBG_0401/B/1533:1538UNCG
geometric
HL_4LFB_011
HL_61337.2
HL_2QBG_0411/B/1565:1568Mini UNCG
geometric
HL_5J7L_172
NA
HL_2QBG_0421/B/1612:1619No text annotation
geometric
HL_7RQB_040
NA
HL_2QBG_0431/B/1630:1636GNRA
geometric
HL_5J7L_174
NA
HL_2QBG_0441/B/1691:1696UNCG
geometric
HL_5J7L_175
NA
HL_2QBG_0451/B/1728:1731No text annotation
HL_2QBG_0461/B/1752:1756No text annotation
geometric
HL_7RQB_044
NA
HL_2QBG_0471/B/1777:1787No text annotation
geometric
HL_5J7L_178
NA
HL_2QBG_0481/B/1806:1811GNRA related
geometric
HL_3OXE_002
HL_37569.2
HL_2QBG_0491/B/1868:1873GNRA variation
geometric
HL_5J7L_180
NA
HL_2QBG_0501/B/1910:1920No text annotation
geometric
HL_9DFE_046
HL_82185.1
HL_2QBG_0511/B/1949:1957No text annotation
geometric
HL_5J7L_182
NA
HL_2QBG_0521/B/2027:2036No text annotation
geometric
HL_4WF9_047
HL_78372.1
HL_2QBG_0531/B/2142:2149No text annotation
HL_2QBG_0541/B/2209:2215No text annotation
geometric
HL_5J7L_185
NA
HL_2QBG_0551/B/2248:2256No text annotation
geometric
HL_4WF9_049
HL_11974.2
HL_2QBG_0561/B/2264:2276No text annotation
geometric
HL_5J7L_187
NA
HL_2QBG_0581/B/2324:2331Pseudoknot geometry
geometric
HL_5J7L_189
NA
HL_2QBG_0591/B/2356:2361GNRA
geometric
HL_5J7L_190
NA
HL_2QBG_0601/B/2374:2379GNRA
geometric
HL_7RQB_058
NA
HL_2QBG_0611/B/2404:2413No text annotation
geometric
HL_5J7L_192
NA
HL_2QBG_0621/B/2471:2479No text annotation
geometric
HL_5J7L_193
NA
HL_2QBG_0631/B/2528:2535GNRA variation
geometric
HL_5J7L_194
NA
HL_2QBG_0641/B/2551:2557No text annotation
geometric
HL_5TBW_063
NA
HL_2QBG_0651/B/2594:2599GNRA
geometric
HL_4V9F_065
HL_34789.2
HL_2QBG_0661/B/2658:2663GNRA related
geometric
HL_5J7L_179
NA
HL_2QBG_0671/B/2701:2706Ribsomal LSU H95
geometric
HL_5J7L_198
NA
HL_2QBG_0681/B/2745:2759No text annotation
geometric
HL_5J7L_199
NA
HL_2QBG_0691/B/2796:2800Externally structured
geometric
HL_8C3A_022
NA
HL_2QBG_0701/B/2819:2827No text annotation
geometric
HL_5J7L_201
NA
HL_2QBG_0711/B/2856:2861GNRA
geometric
HL_7A0S_068
HL_34789.2

Problematic loops

#loop idProblemSequence
HL_2QBG_027No text annotation
HL_2QBG_057No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_2QBG_0011/A/17:18,
1/A/65:67
Major groove intercalation
geometric
IL_5J7L_355
NA
IL_2QBG_0021/A/23:28,
1/A/56:60
No text annotation
geometric
IL_7A0S_103
IL_18472.5
IL_2QBG_0031/A/30:31,
1/A/51:54
No text annotation
geometric
IL_8VTW_072
NA
IL_2QBG_0041/A/34:38,
1/A/44:48
Symmetric double minor groove platform
geometric
IL_5J7L_358
NA
IL_2QBG_0051/A/71:79,
1/A/97:105
Bacterial 5S Loop E
geometric
IL_5J7L_359
NA
IL_2QBG_0061/B/24:30,
1/B/510:516
Triple sheared with non-canonical cWW
geometric
IL_5J7L_245
NA
IL_2QBG_0071/B/36:37,
1/B/442:444
Single bulged A
geometric
IL_5J7L_246
NA
IL_2QBG_0081/B/43:44,
1/B/434:436
Minor groove platform
geometric
IL_5J7L_247
NA
IL_2QBG_0091/B/81:85,
1/B/97:105
No text annotation
IL_2QBG_0101/B/183:184,
1/B/212:214
Single stack bend
geometric
IL_5J7L_249
NA
IL_2QBG_0111/B/188:194,
1/B/201:208
8x7 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_250
NA
IL_2QBG_0121/B/239:245,
1/B/253:258
7x6 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_251
NA
IL_2QBG_0131/B/269:271,
1/B/366:370
No text annotation
geometric
IL_5J7L_252
NA
IL_2QBG_0141/B/274:281,
1/B/359:363
No text annotation
geometric
IL_5J7L_253
NA
IL_2QBG_0151/B/293:295,
1/B/343:347
No text annotation
geometric
IL_4WF9_014
IL_76658.1
IL_2QBG_0161/B/481:484,
1/B/496:509
No text annotation
geometric
IL_5J7L_255
NA
IL_2QBG_0171/B/536:539,
1/B/554:557
Double sheared
geometric
IL_5J7L_256
NA
IL_2QBG_0181/B/564:566,
1/B/575:577
Isolated non-canonical cWW pair
geometric
IL_4WF9_017
IL_71625.2
IL_2QBG_0191/B/606:610,
1/B/618:622
AAA cross-strand stack
geometric
IL_5J7L_258
NA
IL_2QBG_0201/B/672:674,
1/B/806:808
No text annotation
geometric
IL_7RQB_017
NA
IL_2QBG_0211/B/674:678,
1/B/799:806
tHW-tHW cross-strand stack
geometric
IL_5J7L_260
NA
IL_2QBG_0221/B/697:698,
1/B/763:765
Single bulged A
geometric
IL_5J7L_261
NA
IL_2QBG_0231/B/702:703,
1/B/728:730
Single bulged G
geometric
IL_5J7L_262
NA
IL_2QBG_0241/B/703:707,
1/B/724:728
Triple sheared
geometric
IL_5J7L_263
NA
IL_2QBG_0251/B/738:740,
1/B/757:758
Major groove platform
geometric
IL_5J7L_264
NA
IL_2QBG_0261/B/775:777,
1/B/787:791
Multiple bulged bases
geometric
IL_5J7L_265
NA
IL_2QBG_0271/B/837:838,
1/B/940:942
Single stack bend
geometric
IL_4WF9_028
IL_15011.2
IL_2QBG_0281/B/844:848,
1/B/930:934
No text annotation
geometric
IL_5J7L_399
NA
IL_2QBG_0291/B/850:851,
1/B/926:928
Single stack bend
geometric
IL_5J7L_269
NA
IL_2QBG_0301/B/856:858,
1/B/919:921
Isolated non-canonical cWW pair
geometric
IL_4V88_472
NA
IL_2QBG_0311/B/858:862,
1/B/915:919
5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_4V9F_033
IL_38862.5
IL_2QBG_0321/B/862:863,
1/B/913:915
Single bulged G
geometric
IL_5J7L_271
NA
IL_2QBG_0331/B/864:868,
1/B/909:912
C-loop with bulged stacked A's
geometric
IL_5J7L_272
NA
IL_2QBG_0341/B/870:872,
1/B/905:907
Isolated non-canonical cWW pair
geometric
IL_5J7L_273
NA
IL_2QBG_0351/B/994:996,
1/B/1159:1160
Single bulged C
geometric
IL_5J7L_276
NA
IL_2QBG_0361/B/998:1002,
1/B/1153:1157
UAA/GAN
geometric
IL_5J7L_277
NA
IL_2QBG_0371/B/1004:1011,
1/B/1150:1151
SSU/LSU pseudoknot
geometric
IL_5J7L_278
NA
IL_2QBG_0381/B/1011:1013,
1/B/1149:1150
Single bulged U
geometric
IL_5J7L_279
NA
IL_2QBG_0391/B/1018:1024,
1/B/1140:1144
Kink-turn related
geometric
IL_4WF9_039
IL_57188.6
IL_2QBG_0401/B/1031:1034,
1/B/1121:1123
Isolated non-canonical cWW pair
geometric
IL_5J7L_282
NA
IL_2QBG_0411/B/1038:1041,
1/B/1114:1117
Tandem non-canonical cWW pairs
geometric
IL_5J7L_283
NA
IL_2QBG_0421/B/1043:1051,
1/B/1108:1112
Kink-turn
geometric
IL_5J7L_284
NA
IL_2QBG_0431/B/1059:1062,
1/B/1076:1079
No text annotation
geometric
IL_1MMS_001
NA
IL_2QBG_0441/B/1087:1090,
1/B/1101:1102
Major groove platform
geometric
IL_4V9F_044
IL_48076.8
IL_2QBG_0451/B/1196:1198,
1/B/1247:1250
Isolated cWS basepair
geometric
IL_5J7L_286
NA
IL_2QBG_0461/B/1202:1206,
1/B/1240:1243
No text annotation
geometric
IL_5J7L_287
NA
IL_2QBG_0471/B/1208:1215,
1/B/1234:1238
Kink-turn
geometric
IL_7RQB_047
NA
IL_2QBG_0481/B/1262:1269,
1/B/2011:2017
8x7 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_289
NA
IL_2QBG_0491/B/1310:1313,
1/B/1603:1604
Major groove platform; stack outside cWW
geometric
IL_7RQB_050
NA
IL_2QBG_0501/B/1319:1323,
1/B/1331:1333
C-loop
geometric
IL_5J7L_291
NA
IL_2QBG_0511/B/1351:1355,
1/B/1376:1380
UAA/GAN
geometric
IL_5J7L_292
NA
IL_2QBG_0521/B/1357:1361,
1/B/1370:1374
tSH-tHW-tHS
geometric
IL_5J7L_293
NA
IL_2QBG_0531/B/1415:1416,
1/B/1582:1587
No text annotation
geometric
IL_5J7L_294
NA
IL_2QBG_0541/B/1417:1421,
1/B/1577:1581
UAA/GAN
geometric
IL_7RQB_055
NA
IL_2QBG_0551/B/1432:1435,
1/B/1557:1561
Tandem non-canonical cWW pairs
geometric
IL_5J7L_296
NA
IL_2QBG_0561/B/1437:1440,
1/B/1551:1555
No text annotation
IL_2QBG_0571/B/1468:1471,
1/B/1520:1524
No text annotation
geometric
IL_5J7L_299
NA
IL_2QBG_0581/B/1474:1478,
1/B/1513:1517
tSH-tHW-tHS
geometric
IL_5J7L_300
NA
IL_2QBG_0591/B/1481:1482,
1/B/1507:1510
No text annotation
IL_2QBG_0601/B/1489:1491,
1/B/1499:1500
Single bulged A
geometric
IL_5J7L_302
NA
IL_2QBG_0611/B/1526:1529,
1/B/1542:1546
UAA/GAN variation
geometric
IL_5J7L_303
NA
IL_2QBG_0621/B/1651:1656,
1/B/2004:2006
No text annotation
geometric
IL_5J7L_304
NA
IL_2QBG_0631/B/1663:1665,
1/B/1995:1997
Isolated tWW turn
geometric
IL_4WF9_063
IL_10432.1
IL_2QBG_0641/B/1666:1669,
1/B/1993:1994
Major groove platform; stack outside cWW
geometric
IL_7RQB_066
NA
IL_2QBG_0651/B/1669:1674,
1/B/1990:1993
Intercalated tWH
geometric
IL_5J7L_307
NA
IL_2QBG_0661/B/1686:1691,
1/B/1696:1702
tSH-tSH-tHH-tHS
geometric
IL_5J7L_308
NA
IL_2QBG_0671/B/1712:1718,
1/B/1742:1746
6x5 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_309
NA
IL_2QBG_0681/B/1720:1724,
1/B/1736:1740
Triple sheared
geometric
IL_5J7L_310
NA
IL_2QBG_0691/B/1727:1728,
1/B/1731:1733
Single bulged C
geometric
IL_5J7L_311
NA
IL_2QBG_0701/B/1770:1771,
1/B/1980:1982
Single bulged A
geometric
IL_5J7L_312
NA
IL_2QBG_0711/B/1798:1804,
1/B/1813:1821
Kink-turn related
geometric
IL_5J7L_313
NA
IL_2QBG_0721/B/1837:1840,
1/B/1902:1903
Minor groove platform, major groove intercalation
geometric
IL_5J7L_314
NA
IL_2QBG_0731/B/1841:1842,
1/B/1898:1901
Major groove intercalation
geometric
IL_5J7L_315
NA
IL_2QBG_0741/B/1846:1849,
1/B/1893:1894
Minor groove platform
geometric
IL_7RQB_073
NA
IL_2QBG_0751/B/1864:1867,
1/B/1874:1878
UAA/GAN related
geometric
IL_5J7L_317
NA
IL_2QBG_0761/B/1933:1934,
1/B/1964:1967
Bulged stacked bases
geometric
IL_5J7L_318
NA
IL_2QBG_0771/B/1934:1945,
1/B/1961:1964
No text annotation
geometric
IL_7A0S_072
IL_04332.3
IL_2QBG_0781/B/2050:2052,
1/B/2617:2618
Major groove platform
geometric
IL_5J7L_320
NA
IL_2QBG_0791/B/2054:2056,
1/B/2612:2615
No text annotation
geometric
IL_5J7L_321
NA
IL_2QBG_0801/B/2067:2069,
1/B/2442:2443
Single bulged U
geometric
IL_7A0S_075
IL_97561.2
IL_2QBG_0811/B/2070:2071,
1/B/2438:2441
Minor groove platform
geometric
IL_5TBW_094
NA
IL_2QBG_0821/B/2081:2083,
1/B/2236:2239
Isolated tHS basepair with bulges
geometric
IL_5J7L_325
NA
IL_2QBG_0831/B/2085:2087,
1/B/2232:2234
Isolated non-canonical cWW pair
geometric
IL_5J7L_326
NA
IL_2QBG_0841/B/2103:2105,
1/B/2184:2186
Decoding loop related
geometric
IL_2O3X_003
IL_53541.1
IL_2QBG_0851/B/2108:2110,
1/B/2179:2181
No text annotation
IL_2QBG_0861/B/2202:2204,
1/B/2220:2221
Single bulged U
geometric
IL_5J7L_331
NA
IL_2QBG_0871/B/2297:2299,
1/B/2317:2321
No text annotation
IL_2QBG_0881/B/2350:2353,
1/B/2364:2367
Double sheared
geometric
IL_7RQB_089
NA
IL_2QBG_0891/B/2401:2403,
1/B/2414:2415
No text annotation
IL_2QBG_0901/B/2453:2454,
1/B/2498:2500
Single stack bend
geometric
IL_4WF9_089
IL_15011.2
IL_2QBG_0911/B/2454:2455,
1/B/2496:2498
Major groove platform
geometric
IL_4WF9_090
IL_48076.8
IL_2QBG_0921/B/2457:2459,
1/B/2493:2494
Major groove platform
geometric
IL_5TBW_104
NA
IL_2QBG_0931/B/2459:2461,
1/B/2489:2493
Major groove minor groove platform with extra cWW
geometric
IL_5J7L_337
NA
IL_2QBG_0941/B/2466:2470,
1/B/2480:2484
Double sheared with non-canonical cWW
geometric
IL_5J7L_338
NA
IL_2QBG_0951/B/2507:2508,
1/B/2580:2582
Major groove platform
geometric
IL_4WF9_094
IL_46637.2
IL_2QBG_0961/B/2510:2512,
1/B/2574:2578
Isolated non-canonical cWW with bulges
geometric
IL_5J7L_340
NA
IL_2QBG_0971/B/2512:2513,
1/B/2571:2574
No text annotation
geometric
IL_5J7L_341
NA
IL_2QBG_0981/B/2522:2523,
1/B/2540:2543
Major groove platform with intercalation
geometric
IL_5J7L_342
NA
IL_2QBG_0991/B/2591:2592,
1/B/2601:2603
Single bulged A
geometric
IL_5J7L_344
NA
IL_2QBG_1001/B/2636:2640,
1/B/2774:2782
tSH-tHS-tHW
geometric
IL_5J7L_345
NA
IL_2QBG_1011/B/2652:2658,
1/B/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_5J7L_346
NA
IL_2QBG_1021/B/2680:2684,
1/B/2725:2727
C-loop
geometric
IL_5J7L_347
NA
IL_2QBG_1031/B/2687:2691,
1/B/2718:2722
UAA/GAN related, with intercalation
geometric
IL_5J7L_348
NA
IL_2QBG_1041/B/2695:2696,
1/B/2711:2714
Multiple bulged bases
geometric
IL_5J7L_349
NA
IL_2QBG_1051/B/2737:2742,
1/B/2762:2767
UAA/GAN with extra cWW
geometric
IL_5J7L_350
NA
IL_2QBG_1061/B/2806:2811,
1/B/2889:2892
No text annotation
geometric
IL_5J7L_351
NA
IL_2QBG_1071/B/2838:2839,
1/B/2878:2880
Major groove intercalation
geometric
IL_4WF9_112
IL_14190.2
IL_2QBG_1081/B/2843:2846,
1/B/2870:2874
Multiple bulged bases with non-canonical cWW
geometric
IL_5J7L_353
NA
IL_2QBG_1091/B/2847:2852,
1/B/2865:2869
No text annotation
geometric
IL_7A0S_101
IL_48489.1

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_2QBG_0011/A/10:16,
1/A/68:70,
1/A/106:110
No text annotation
J3_2QBG_0021/B/683:689,
1/B/773:775,
1/B/791:794
No text annotation
geometric
J3_5J7L_038
NA
J3_2QBG_0031/B/698:700,
1/B/732:736,
1/B/760:763
No text annotation
geometric
J3_5J7L_039
NA
J3_2QBG_0041/B/1055:1057,
1/B/1081:1087,
1/B/1102:1104
No text annotation
geometric
J3_1MMS_001
NA
J3_2QBG_0051/B/1298:1303,
1/B/1625:1627,
1/B/1639:1642
No text annotation
geometric
J3_5J7L_041
NA
J3_2QBG_0061/B/1306:1309,
1/B/1605:1611,
1/B/1620:1622
No text annotation
geometric
J3_7A0S_007
J3_47341.1
J3_2QBG_0071/B/2091:2093,
1/B/2196:2200,
1/B/2223:2228
Kink-turn 3-way junction
geometric
J3_5J7L_044
NA
J3_2QBG_0081/B/2295:2297,
1/B/2321:2323,
1/B/2332:2337
No text annotation
geometric
J3_5J7L_045
NA
J3_2QBG_0091/B/2517:2520,
1/B/2545:2547,
1/B/2561:2567
No text annotation
geometric
J3_5J7L_046
NA
J3_2QBG_0101/B/2812:2815,
1/B/2831:2836,
1/B/2882:2888
No text annotation
geometric
J3_5J7L_048
NA

Problematic loops

No problematic loops


Coloring options:
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