HL_2QEX_037

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

2QEX|1|0|U|1505, 2QEX|1|0|U|1506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2QEX_037 not in the Motif Atlas

Homologous match to HL_4V9F_037

Geometric discrepancy: 0.0598

The information below is about HL_4V9F_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

2QEX|1|0|G|1498
2QEX|1|0|U|1499
2QEX|1|0|U|1500
2QEX|1|0|A|1501
2QEX|1|0|A|1502
2QEX|1|0|U|1503
2QEX|1|0|A|1504
2QEX|1|0|U|1505
2QEX|1|0|U|1506
2QEX|1|0|C|1507

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L19e

Chain S

50S ribosomal protein L23P