HL_2QEX_049

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUACAAG

Length

8 nucleotides

Bulged bases

2QEX|1|0|A|1919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2QEX_049 not in the Motif Atlas

Homologous match to HL_4V9F_049

Geometric discrepancy: 0.0784

The information below is about HL_4V9F_049

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

2QEX|1|0|C|1916
2QEX|1|0|G|1917
2QEX|1|0|U|1918
2QEX|1|0|A|1919
2QEX|1|0|C|1920
2QEX|1|0|A|1921
2QEX|1|0|A|1922
2QEX|1|0|G|1923

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L44e