HL_2QEX_062

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGCACAUAU

Length

9 nucleotides

Bulged bases

2QEX|1|0|C|2508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2QEX_062 not in the Motif Atlas

Homologous match to HL_4V9F_062

Geometric discrepancy: 0.1219

The information below is about HL_4V9F_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

2QEX|1|0|A|2506
2QEX|1|0|G|2507
2QEX|1|0|C|2508
2QEX|1|0|A|2509
2QEX|1|0|C|2510
2QEX|1|0|A|2511
2QEX|1|0|U|2512
2QEX|1|0|A|2513
2QEX|1|0|U|2514

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L10e