HL_2QEX_068

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

2QEX|1|0|G|2786, 2QEX|1|0|C|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2QEX_068 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.0562

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

2QEX|1|0|C|2780
2QEX|1|0|U|2781
2QEX|1|0|G|2782
2QEX|1|0|A|2783
2QEX|1|0|A|2784
2QEX|1|0|C|2785
2QEX|1|0|G|2786
2QEX|1|0|C|2787
2QEX|1|0|A|2788
2QEX|1|0|U|2789
2QEX|1|0|C|2790
2QEX|1|0|U|2791
2QEX|1|0|A|2792
2QEX|1|0|A|2793
2QEX|1|0|G|2794

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P