HL_2QWY_001

3D structure

PDB id

2QWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

SAM-II riboswitch bound to S-adenosylmethionine

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AGUCGCGUGAUAAAUGU

Length

17 nucleotides

Bulged bases

2QWY|1|A|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19399.1

Basepair signature

cWW-R-R-R-R-R-cSW-R-R-R-R-R-R

Number of instances in this motif group

2

Unit IDs

2QWY|1|A|A|24
2QWY|1|A|G|25
2QWY|1|A|U|26
2QWY|1|A|C|27
2QWY|1|A|G|28
2QWY|1|A|C|29
2QWY|1|A|G|30
2QWY|1|A|U|31
2QWY|1|A|G|32
2QWY|1|A|A|33
2QWY|1|A|U|34
2QWY|1|A|A|35
2QWY|1|A|A|36
2QWY|1|A|A|37
2QWY|1|A|U|38
2QWY|1|A|G|39
2QWY|1|A|U|40

Current chains

Chain A

SAM-II riboswitch

Nearby chains

Chain B

SAM-II riboswitch