Motif HL_19399.1 Version HL_19399.1 of this group appears in releases 0.1 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 1-16 | 4-13 | 5-12 | 6-10 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2QWY_001 | 2QWY | 0.0000 | 1 | A | SAM-II riboswitch | A | 24 | G | 25 | U | 26 | C | 27 | G | 28 | C | 29 | G | 30 | U | 31 | G | 32 | A | 33 | A | 35 | A | 36 | A | 37 | U | 38 | G | 39 | U | 40 | cWW | ncSs | cSW | |
| 2 | HL_2QWY_002 | 2QWY | 0.2068 | 1 | B | SAM-II riboswitch | A | 24 | G | 25 | U | 26 | C | 27 | G | 28 | C | 29 | G | 30 | U | 31 | G | 32 | A | 33 | A | 35 | A | 36 | A | 37 | U | 38 | G | 39 | U | 40 | cWW | ncSs | ncSs | cSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGUCGCGUGAUAAAUGU | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUCGCGUGAUAAAUG | 2 |
Release history
| Release | 0.1 | 0.2 | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.16 | 1.17 | 1.18 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2011-12-08 | 2011-12-08 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-15 | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R-R-R-cSW-R-R-R-R-R-R
- Heat map statistics
- Min 0.21 | Avg 0.10 | Max 0.21
Coloring options: