HL_2R93_001

3D structure

PDB id

2R93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of RNA polymerase II with a hepatitis delta virus-derived RNA stem loop

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UCG

Length

3 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83914.1

Basepair signature

Not available

Number of instances in this motif group

11

Unit IDs

2R93|1|R|U|7
2R93|1|R|C|12
2R93|1|R|G|13

Current chains

Chain R

RNA (5'-R(*UP*GP*AP*UP*UP*CP*UP*CP*UP*AP*UP*CP*GP*GP*AP*AP*UP*C)-3')

Nearby chains

Chain A

DNA-directed RNA polymerase II subunit RPB1

Chain B

DNA-directed RNA polymerase II subunit RPB2