Motif HL_83914.1 Version HL_83914.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-2 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1S72_035 | 1S72 | 0.4882 | 4 | Pseudoknot geometry with 3' bulge (H) | 0 | LSU rRNA | G | 1430 | A | 1434 | C | 1436 | cWW | |
| 2 | HL_2ZJR_030 | 2ZJR | 0.4823 | 2 | X | LSU rRNA | C | 1185 | A | 1188 | G | 1189 | ntWH | cWW | |
| 3 | HL_2ZJR_037 | 2ZJR | 0.5131 | 4 | Pseudoknot geometry with 3' bulge (H) | X | LSU rRNA | G | 1508 | A | 1512 | C | 1514 | cWW | |
| 4 | HL_2QBG_039 | 2QBG | 0.5731 | 4 | B | 23S rRNA | G | 1492 | A | 1496 | C | 1498 | cWW | ||
| 5 | HL_2QBG_035 | 2QBG | 0.5538 | 4 | B | 23S rRNA | G | 1324 | A | 1328 | C | 1330 | cWW | ||
| 6 | HL_3PYO_041 | 3PYO | 0.4877 | 3 | A | 23S ribosomal RNA | C | 163|||B | G | 1633 | G | 1635 | cWW | ||
| 7 | HL_2R93_001 | 2R93 | 0.4692 | 0 | R | RNA (18-mer) | U | 7 | C | 12 | G | 13 | cWW | ||
| 8 | HL_1S72_004 | 1S72 | 0.0000 | 0 | Mini UNCG related (H) | 0 | LSU rRNA | U | 125 | A | 128 | A | 129 | cWW | |
| 9 | HL_2ZJR_033 | 2ZJR | 0.7728 | 4 | Pseudoknot geometry with 3' bulge (H) | X | LSU rRNA | G | 1337 | G | 1341 | C | 1343 | cWW | |
| 10 | HL_3PYO_033 | 3PYO | 0.9092 | 4 | A | 23S ribosomal RNA | G | 1324 | G | 1328 | C | 1330 | cWW | ||
| 11 | HL_3O58_032 | 3O58 | 0.9744 | 4 | 1 | 25S ribosomal RNA | A | 1506 | G | 1510 | U | 1512 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUCGUC | 2 |
| GCUGAUC | 1 |
| CGAAG | 1 |
| GAAAAUC | 1 |
| GCAAAUC | 1 |
| GUUAAUC | 1 |
| CAAGAG | 1 |
| UCG | 1 |
| UAA | 1 |
| AGCAGUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUCGU | 2 |
| CUGAU | 1 |
| GAA | 1 |
| AAAAU | 1 |
| CAAAU | 1 |
| UUAAU | 1 |
| AAGA | 1 |
| C | 1 |
| A | 1 |
| GCAGU | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_83914.1 | Only in the child motif |
|---|---|---|---|
| HL_83914.2 Compare | HL_1S72_035, HL_2QBG_035, HL_2ZJR_030, HL_2ZJR_033, HL_3PYO_041, HL_2QBG_039, HL_2ZJR_037, HL_3O58_032, HL_3PYO_033 | HL_2R93_001, HL_1S72_004 | HL_2ZJR_041 |
- Annotations
-
- (7)
- Pseudoknot geometry with 3' bulge (H) (3)
- Mini UNCG related (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.09 | Avg 0.48 | Max 0.97
Coloring options: