HL_2RLU_008

3D structure

PDB id

2RLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Three Dimensional Structure of the Moorella thermoacetica Selenocysteine Insertion Sequence RNA Hairpin and its Interaction with the Elongation factor SelB

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GGGUCUC

Length

7 nucleotides

Bulged bases

2RLU|8|A|U|10, 2RLU|8|A|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2RLU_008 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2251

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

2RLU|8|A|G|7
2RLU|8|A|G|8
2RLU|8|A|G|9
2RLU|8|A|U|10
2RLU|8|A|C|11
2RLU|8|A|U|12
2RLU|8|A|C|13

Current chains

Chain A

RNA (5'-R(*GP*GP*UP*UP*GP*CP*GP*GP*GP*UP*CP*UP*CP*GP*CP*AP*AP*CP*C)-3')

Nearby chains