HL_2RP0_008

3D structure

PDB id

2RP0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined solution structure of the PEMV-1 mRNA pseudoknot, 28 lowest energy structures

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GU(CH)GACUC

Length

8 nucleotides

Bulged bases

2RP0|8|A|U|9, 2RP0|8|A|U|14

QA status

Modified nucleotides: CH

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2RP0_008 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3728

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

2RP0|8|A|G|8
2RP0|8|A|U|9
2RP0|8|A|CH|10
2RP0|8|A|G|11
2RP0|8|A|A|12
2RP0|8|A|C|13
2RP0|8|A|U|14
2RP0|8|A|C|15

Current chains

Chain A

PEMV-1 mRNA pseudoknot

Nearby chains