HL_2RVO_011

3D structure

PDB id

2RVO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UCUACA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2RVO_011 not in the Motif Atlas

Geometric match to HL_4V88_197

Geometric discrepancy: 0.3932

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

2RVO|11|A|U|16
2RVO|11|A|C|17
2RVO|11|A|U|18
2RVO|11|A|A|19
2RVO|11|A|C|20
2RVO|11|A|A|21

Current chains

Chain A

RNA (34-MER)

Nearby chains