HL_2UU9_014

3D structure

PDB id

2UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUG-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2UU9_014 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.061

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_86621.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

2UU9|1|A|G|617
2UU9|1|A|C|618
2UU9|1|A|U|619
2UU9|1|A|C|620
2UU9|1|A|A|621
2UU9|1|A|A|622
2UU9|1|A|C|623

Current chains

Chain A

16S RRNA

Nearby chains

Chain D

30S RIBOSOMAL PROTEIN S4

Chain P

30S RIBOSOMAL PROTEIN S16