HL_2UUB_006
3D structure
- PDB id
- 2UUB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUU-codon in the A-site and paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGUAAUGGC
- Length
- 9 nucleotides
- Bulged bases
- 2UUB|1|A|G|266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_2UUB_006 not in the Motif Atlas
- Homologous match to HL_4LFB_006
- Geometric discrepancy: 0.0835
- The information below is about HL_4LFB_006
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_87268.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
2UUB|1|A|G|259
2UUB|1|A|G|260
2UUB|1|A|U|261
2UUB|1|A|A|262
2UUB|1|A|A|263
2UUB|1|A|U|264
2UUB|1|A|G|265
2UUB|1|A|G|266
2UUB|1|A|C|267
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain Q
- 30S RIBOSOMAL PROTEIN S17
- Chain T
- 30S RIBOSOMAL PROTEIN S20
Coloring options: