HL_2UUB_007

3D structure

PDB id

2UUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUU-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2UUB_007 not in the Motif Atlas

Homologous match to HL_5J7L_007

Geometric discrepancy: 0.0615

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

2UUB|1|A|U|296
2UUB|1|A|G|297
2UUB|1|A|A|298
2UUB|1|A|G|299
2UUB|1|A|A|300
2UUB|1|A|G|301

Current chains

Chain A

16S RRNA

Nearby chains

Chain E

30S RIBOSOMAL PROTEIN S5

Chain L

30S RIBOSOMAL PROTEIN S12

Chain Q

30S RIBOSOMAL PROTEIN S17