HL_2UUC_006

3D structure

PDB id

2UUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUA-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

2UUC|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2UUC_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0895

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

2UUC|1|A|G|259
2UUC|1|A|G|260
2UUC|1|A|U|261
2UUC|1|A|A|262
2UUC|1|A|A|263
2UUC|1|A|U|264
2UUC|1|A|G|265
2UUC|1|A|G|266
2UUC|1|A|C|267

Current chains

Chain A

16S RRNA

Nearby chains

Chain Q

30S RIBOSOMAL PROTEIN S17

Chain T

30S RIBOSOMAL PROTEIN S20