HL_2UUC_021

3D structure

PDB id

2UUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUA-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

2UUC|1|A|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2UUC_021 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.1679

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

2UUC|1|A|G|963
2UUC|1|A|A|964
2UUC|1|A|A|965
2UUC|1|A|G|966
2UUC|1|A|C|967
2UUC|1|A|A|968
2UUC|1|A|A|969
2UUC|1|A|C|970
2UUC|1|A|G|971
2UUC|1|A|C|972

Current chains

Chain A

16S RRNA

Nearby chains

Chain I

30S RIBOSOMAL PROTEIN S9

Chain J

30S RIBOSOMAL PROTEIN S10

Chain M

30S RIBOSOMAL PROTEIN S13

Chain N

30S RIBOSOMAL PROTEIN S14

Chain Y

5'-R(*CP*CP*UP*CP*CP*CP*UP*CM0P*AP*CP*6MZP*AP *GP*GP*AP*GP*G)-3'