HL_4LFB_021

3D structure

PDB id

4LFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

GAA(M2G)(5MC)AACGC

Length

10 nucleotides

Bulged bases

4LFB|1|A|A|968, 4LFB|1|A|G|971

QA status

Modified nucleotides: M2G, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4LFB|1|A|G|963
4LFB|1|A|A|964
4LFB|1|A|A|965
4LFB|1|A|M2G|966
4LFB|1|A|5MC|967
4LFB|1|A|A|968
4LFB|1|A|A|969
4LFB|1|A|C|970
4LFB|1|A|G|971
4LFB|1|A|C|972

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

ribosomal protein S9

Chain J

ribosomal protein S10

Chain M

ribosomal protein S13

Chain N

ribosomal protein S14