HL_2UXD_028

3D structure

PDB id

2UXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2UXD_028 not in the Motif Atlas

Homologous match to HL_4LFB_028

Geometric discrepancy: 0.0851

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

2UXD|1|A|G|1265
2UXD|1|A|G|1266
2UXD|1|A|C|1267
2UXD|1|A|A|1268
2UXD|1|A|A|1269
2UXD|1|A|C|1270

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain M

RIBOSOMAL PROTEIN S13

Chain S

RIBOSOMAL PROTEIN S19

Chain V

RIBOSOMAL PROTEIN THX