HL_2VQE_034

3D structure

PDB id

2VQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGUUCGGCC

Length

9 nucleotides

Bulged bases

2VQE|1|A|U|1136, 2VQE|1|A|C|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2VQE_034 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.3872

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

2VQE|1|A|G|1133
2VQE|1|A|G|1134
2VQE|1|A|U|1135
2VQE|1|A|U|1136
2VQE|1|A|C|1137
2VQE|1|A|G|1138
2VQE|1|A|G|1139
2VQE|1|A|C|1140
2VQE|1|A|C|1141

Current chains

Chain A

16S RRNA

Nearby chains

Chain I

30S RIBOSOMAL PROTEIN S9