HL_2WW9_004

3D structure

PDB id

2WW9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the active yeast Ssh1 complex bound to the yeast 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.6 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

2WW9|1|F|G|1665, 2WW9|1|F|U|1669

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2WW9_004 not in the Motif Atlas

Geometric match to HL_7RQB_034

Geometric discrepancy: 0.25

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

2WW9|1|F|A|1664
2WW9|1|F|G|1665
2WW9|1|F|C|1666
2WW9|1|F|A|1667
2WW9|1|F|G|1668
2WW9|1|F|U|1669
2WW9|1|F|U|1670

Current chains

Chain F

25S RRNA

Nearby chains

Chain E

25S RRNA

Chain I

60S RIBOSOMAL PROTEIN L17-A

Chain J

60S RIBOSOMAL PROTEIN L19