HL_2WW9_006
3D structure
- PDB id
- 2WW9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the active yeast Ssh1 complex bound to the yeast 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.6 Å
Loop
- Sequence
- UGCAGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_2WW9_006 not in the Motif Atlas
- Geometric match to HL_4PQV_002
- Geometric discrepancy: 0.3085
- The information below is about HL_4PQV_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_12125.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
2WW9|1|D|U|74
2WW9|1|D|G|75
2WW9|1|D|C|76
2WW9|1|D|A|77
2WW9|1|D|G|78
2WW9|1|D|A|79
Current chains
- Chain D
- 25S RRNA
Nearby chains
- Chain A
- SEC SIXTY-ONE PROTEIN HOMOLOG
- Chain L
- 60S RIBOSOMAL PROTEIN L26-A
- Chain N
- 60S RIBOSOMAL PROTEIN L35
- Chain O
- 60S RIBOSOMAL PROTEIN L39
Coloring options: