HL_2WWA_003

3D structure

PDB id

2WWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of idle yeast Ssh1 complex bound to the yeast 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2WWA_003 not in the Motif Atlas

Geometric match to HL_5J7L_007

Geometric discrepancy: 0.1365

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

2WWA|1|E|U|540
2WWA|1|E|G|541
2WWA|1|E|A|542
2WWA|1|E|A|543
2WWA|1|E|A|544
2WWA|1|E|A|545

Current chains

Chain E

25S RRNA

Nearby chains

Chain F

25S RRNA

Chain I

60S RIBOSOMAL PROTEIN L17-A