HL_2WWB_005

3D structure

PDB id

2WWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE MAMMALIAN SEC61 COMPLEX BOUND TO THE ACTIVELY TRANSLATING WHEAT GERM 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

6.48 Å

Loop

Sequence

GUCGCGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2WWB_005 not in the Motif Atlas

Geometric match to HL_4LFB_002

Geometric discrepancy: 0.3619

The information below is about HL_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

2WWB|1|G|G|1921
2WWB|1|G|U|1922
2WWB|1|G|C|1923
2WWB|1|G|G|1924
2WWB|1|G|C|1925
2WWB|1|G|G|1926
2WWB|1|G|C|1927

Current chains

Chain G

25S RRNA

Nearby chains

Chain J

60S RIBOSOMAL PROTEIN L19