HL_2XO1_002

3D structure

PDB id

2XO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

xpt-pbuX C74U Riboswitch from B. subtilis bound to N6-methyladenine

Experimental method

X-RAY DIFFRACTION

Resolution

1.6 Å

Loop

Sequence

GUUUCUAC

Length

8 nucleotides

Bulged bases

2XO1|1|A|U|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2XO1_002 not in the Motif Atlas

Homologous match to HL_1Y27_002

Geometric discrepancy: 0.0597

The information below is about HL_1Y27_002

Detailed Annotation

Purine riboswitch

Broad Annotation

Purine riboswitch

Motif group

HL_46333.1

Basepair signature

cWW-R-cSH

Number of instances in this motif group

11

Unit IDs

2XO1|1|A|G|46
2XO1|1|A|U|47
2XO1|1|A|U|48
2XO1|1|A|U|49
2XO1|1|A|C|50
2XO1|1|A|U|51
2XO1|1|A|A|52
2XO1|1|A|C|53

Current chains

Chain A

Guanine riboswitch

Nearby chains