HL_2Y9B_003

3D structure

PDB id

2Y9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the spliceosomal U4 snRNP core domain

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2Y9B_003 not in the Motif Atlas

Geometric match to HL_1G1X_003

Geometric discrepancy: 0.3439

The information below is about HL_1G1X_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

2Y9B|1|X|U|812
2Y9B|1|X|G|813
2Y9B|1|X|A|814
2Y9B|1|X|A|815
2Y9B|1|X|A|816
2Y9B|1|X|A|817

Current chains

Chain X

HOMO SAPIENS U4A SNRNA

Nearby chains