HL_2Y9B_005
3D structure
- PDB id
- 2Y9B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the spliceosomal U4 snRNP core domain
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- UGAAAA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_2Y9B_005 not in the Motif Atlas
- Geometric match to HL_5J7L_179
- Geometric discrepancy: 0.1906
- The information below is about HL_5J7L_179
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_04783.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
2Y9B|1|Y|U|812
2Y9B|1|Y|G|813
2Y9B|1|Y|A|814
2Y9B|1|Y|A|815
2Y9B|1|Y|A|816
2Y9B|1|Y|A|817
Current chains
- Chain Y
- HOMO SAPIENS U4A SNRNA
Nearby chains
No other chains within 10ÅColoring options: