HL_2Y9H_002

3D structure

PDB id

2Y9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure A of CRISPR endoribonuclease Cse3 bound to 19 nt RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGCGUG

Length

6 nucleotides

Bulged bases

2Y9H|1|D|G|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2Y9H_002 not in the Motif Atlas

Geometric match to HL_2Y9H_004

Geometric discrepancy: 0.1051

The information below is about HL_2Y9H_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_14333.1

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

2Y9H|1|D|C|11
2Y9H|1|D|G|12
2Y9H|1|D|C|13
2Y9H|1|D|G|14
2Y9H|1|D|U|15
2Y9H|1|D|G|16

Current chains

Chain D

5'-R(*UP*CP*CP*CP*CP*AP*CP*GP*CP*GP*UP*GP*UP*GP *GP*GP*DGP*AP*UP)-3'

Nearby chains

Chain C

CSE3

Chain E

CSE3

Chain F

5'-R(*UP*CP*CP*CP*CP*AP*CP*GP*CP*GP*UP*GP*UP*GP *GP*GP*DGP*AP*UP)-3'

Chain K

CSE3