HL_2YKR_003

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2YKR_003 not in the Motif Atlas

Homologous match to HL_6CZR_074

Geometric discrepancy: 0.4038

The information below is about HL_6CZR_074

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

2YKR|1|A|G|158
2YKR|1|A|G|159
2YKR|1|A|A|160
2YKR|1|A|A|161
2YKR|1|A|A|162
2YKR|1|A|C|163

Current chains

Chain A

16S RRNA

Nearby chains