2YKR Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_2YKR_001 | No text annotation | ||
| HL_2YKR_002 | No text annotation | ||
| HL_2YKR_033 | No text annotation | ||
| HL_2YKR_034 | GNRA with extra near cWW | ||
| HL_2YKR_003 | GNRA | ||
| HL_2YKR_004 | GNRA | ||
| HL_2YKR_005 | No text annotation | ||
| HL_2YKR_006 | tRNA D-loop | ||
| HL_2YKR_039 | GNRA related | ||
| HL_2YKR_007 | GNRA | ||
| HL_2YKR_008 | No text annotation | ||
| HL_2YKR_009 | No text annotation | ||
| HL_2YKR_035 | UNCG | ||
| HL_2YKR_010 | tRNA anticodon loop | ||
| HL_2YKR_036 | GNRA | ||
| HL_2YKR_011 | UNCG | ||
| HL_2YKR_012 | No text annotation | ||
| HL_2YKR_013 | GNRA variation | ||
| HL_2YKR_014 | GNRA-like with tWH | ||
| HL_2YKR_015 | No text annotation | ||
| HL_2YKR_016 | GNRA | ||
| HL_2YKR_037 | No text annotation | ||
| HL_2YKR_017 | No text annotation | ||
| HL_2YKR_018 | No text annotation | ||
| HL_2YKR_019 | GNRA | ||
| HL_2YKR_020 | GNRA | ||
| HL_2YKR_021 | No text annotation | ||
| HL_2YKR_022 | GNRA | ||
| HL_2YKR_023 | No text annotation | ||
| HL_2YKR_024 | GNRA | ||
| HL_2YKR_025 | T-loop related | ||
| HL_2YKR_026 | No text annotation | ||
| HL_2YKR_038 | No text annotation | ||
| HL_2YKR_027 | GNRA | ||
| HL_2YKR_028 | GNRA | ||
| HL_2YKR_029 | No text annotation | ||
| HL_2YKR_030 | No text annotation | ||
| HL_2YKR_031 | No text annotation | ||
| HL_2YKR_040 | UNCG | ||
| HL_2YKR_032 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_2YKR_001 | Isolated non-canonical cWW pair | ||
| IL_2YKR_105 | Single bulged G | ||
| IL_2YKR_002 | Single bulged A | ||
| IL_2YKR_106 | Minor groove platform | ||
| IL_2YKR_003 | Minor groove platform with extra cWW | ||
| IL_2YKR_004 | Isolated non-canonical cWW pair | ||
| IL_2YKR_086 | Multiple bulged bases | ||
| IL_2YKR_005 | Isolated non-canonical cWW pair | ||
| IL_2YKR_006 | Minor groove platform with extra cWW | ||
| IL_2YKR_007 | No text annotation | ||
| IL_2YKR_087 | Minor groove platform | ||
| IL_2YKR_008 | No text annotation | ||
| IL_2YKR_009 | No text annotation | ||
| IL_2YKR_010 | No text annotation | ||
| IL_2YKR_088 | Isolated cWH basepair | ||
| IL_2YKR_011 | Tandem non-canonical cWW pairs | ||
| IL_2YKR_107 | tWH-tWH-tHW-tHW | ||
| IL_2YKR_089 | No text annotation | ||
| IL_2YKR_012 | No text annotation | ||
| IL_2YKR_013 | No text annotation | ||
| IL_2YKR_090 | No text annotation | ||
| IL_2YKR_014 | No text annotation | ||
| IL_2YKR_015 | Kink-turn with non-sequential stacking | ||
| IL_2YKR_091 | No text annotation | ||
| IL_2YKR_016 | No text annotation | ||
| IL_2YKR_017 | Isolated non-canonical cWW pair | ||
| IL_2YKR_018 | Isolated non-canonical cWW pair | ||
| IL_2YKR_019 | No text annotation | ||
| IL_2YKR_020 | No text annotation | ||
| IL_2YKR_021 | Isolated non-canonical cWW pair | ||
| IL_2YKR_022 | Single bulged U | ||
| IL_2YKR_023 | No text annotation | ||
| IL_2YKR_092 | No text annotation | ||
| IL_2YKR_024 | Tandem non-canonical cWW pairs | ||
| IL_2YKR_025 | No text annotation | ||
| IL_2YKR_093 | No text annotation | ||
| IL_2YKR_026 | tSH-tHW-tWW | ||
| IL_2YKR_108 | No text annotation | ||
| IL_2YKR_094 | No text annotation | ||
| IL_2YKR_027 | No text annotation | ||
| IL_2YKR_028 | No text annotation | ||
| IL_2YKR_029 | SSU/LSU pseudoknot | ||
| IL_2YKR_030 | No text annotation | ||
| IL_2YKR_031 | No text annotation | ||
| IL_2YKR_095 | No text annotation | ||
| IL_2YKR_032 | No text annotation | ||
| IL_2YKR_033 | No text annotation | ||
| IL_2YKR_034 | tSH-tHW-tHS | ||
| IL_2YKR_035 | Isolated non-canonical cWW pair | ||
| IL_2YKR_036 | Major groove platform | ||
| IL_2YKR_037 | Major groove minor groove platform; mini C-loop | ||
| IL_2YKR_038 | Tandem non-canonical cWW pairs with near WC pairs | ||
| IL_2YKR_039 | No text annotation | ||
| IL_2YKR_109 | No text annotation | ||
| IL_2YKR_110 | Major groove platform; stack outside cWW | ||
| IL_2YKR_096 | No text annotation | ||
| IL_2YKR_040 | No text annotation | ||
| IL_2YKR_097 | Single stack bend | ||
| IL_2YKR_041 | No text annotation | ||
| IL_2YKR_042 | Tandem non-canonical cWW pairs | ||
| IL_2YKR_098 | Triple non-canonical cWW pairs | ||
| IL_2YKR_043 | No text annotation | ||
| IL_2YKR_044 | Kink-turn | ||
| IL_2YKR_045 | Isolated non-canonical cWW pair | ||
| IL_2YKR_046 | No text annotation | ||
| IL_2YKR_099 | No text annotation | ||
| IL_2YKR_111 | No text annotation | ||
| IL_2YKR_047 | tSH-tHW-tHS | ||
| IL_2YKR_048 | Self complementary | ||
| IL_2YKR_049 | 9x7 Sarcin-Ricin with inserted C; G-bulge | ||
| IL_2YKR_050 | No text annotation | ||
| IL_2YKR_112 | Single bulged A | ||
| IL_2YKR_051 | No text annotation | ||
| IL_2YKR_052 | Minor groove platform | ||
| IL_2YKR_053 | Decoding loop related | ||
| IL_2YKR_054 | Isolated non-canonical cWW pair | ||
| IL_2YKR_055 | Isolated non-canonical cWW pair | ||
| IL_2YKR_113 | Minor groove platform | ||
| IL_2YKR_056 | No text annotation | ||
| IL_2YKR_114 | Single stack bend | ||
| IL_2YKR_057 | No text annotation | ||
| IL_2YKR_058 | Single bulged U | ||
| IL_2YKR_059 | No text annotation | ||
| IL_2YKR_060 | Single bulged A | ||
| IL_2YKR_061 | Isolated non-canonical cWW pair | ||
| IL_2YKR_062 | No text annotation | ||
| IL_2YKR_063 | Minor groove platform | ||
| IL_2YKR_100 | No text annotation | ||
| IL_2YKR_064 | No text annotation | ||
| IL_2YKR_065 | No text annotation | ||
| IL_2YKR_115 | No text annotation | ||
| IL_2YKR_101 | No text annotation | ||
| IL_2YKR_066 | No text annotation | ||
| IL_2YKR_067 | 180 degree turn | ||
| IL_2YKR_068 | No text annotation | ||
| IL_2YKR_069 | No text annotation | ||
| IL_2YKR_070 | No text annotation | ||
| IL_2YKR_071 | Self complementary | ||
| IL_2YKR_072 | Isolated non-canonical cWW pair | ||
| IL_2YKR_073 | No text annotation | ||
| IL_2YKR_074 | No text annotation | ||
| IL_2YKR_075 | Isolated non-canonical cWW pair | ||
| IL_2YKR_102 | Partly complementary | ||
| IL_2YKR_076 | No text annotation | ||
| IL_2YKR_077 | Partly complementary | ||
| IL_2YKR_078 | Double sheared | ||
| IL_2YKR_079 | Isolated non-canonical cWW pair | ||
| IL_2YKR_080 | Isolated non-canonical cWW pair | ||
| IL_2YKR_085 | No text annotation | ||
| IL_2YKR_103 | No text annotation | ||
| IL_2YKR_116 | Triple sheared related | ||
| IL_2YKR_082 | No text annotation | ||
| IL_2YKR_104 | No text annotation | ||
| IL_2YKR_083 | No text annotation | ||
| IL_2YKR_084 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_2YKR_001 | No text annotation | ||
| J3_2YKR_011 | No text annotation | ||
| J3_2YKR_022 | No text annotation | ||
| J3_2YKR_014 | No text annotation | ||
| J3_2YKR_015 | No text annotation | ||
| J3_2YKR_012 | No text annotation | ||
| J3_2YKR_016 | No text annotation | ||
| J3_2YKR_002 | No text annotation | ||
| J3_2YKR_003 | No text annotation | ||
| J3_2YKR_017 | No text annotation | ||
| J3_2YKR_004 | No text annotation | ||
| J3_2YKR_018 | No text annotation | ||
| J3_2YKR_005 | No text annotation | ||
| J3_2YKR_006 | No text annotation | ||
| J3_2YKR_023 | No text annotation | ||
| J3_2YKR_019 | No text annotation | ||
| J3_2YKR_007 | No text annotation | ||
| J3_2YKR_024 | No text annotation | ||
| J3_2YKR_008 | No text annotation | ||
| J3_2YKR_013 | No text annotation | ||
| J3_2YKR_025 | No text annotation | ||
| J3_2YKR_009 | No text annotation | ||
| J3_2YKR_026 | No text annotation | ||
| J3_2YKR_020 | No text annotation | ||
| J3_2YKR_010 | No text annotation | ||
| J3_2YKR_021 | No text annotation | ||
| J4_2YKR_001 | No text annotation | ||
| J4_2YKR_002 | No text annotation | ||
| J4_2YKR_003 | No text annotation | ||
| J5_2YKR_001 | No text annotation | ||
| J5_2YKR_002 | No text annotation |
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