HL_2YKR_016

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2YKR_016 not in the Motif Atlas

Homologous match to HL_4LFB_016

Geometric discrepancy: 0.3498

The information below is about HL_4LFB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

2YKR|1|A|C|726
2YKR|1|A|G|727
2YKR|1|A|A|728
2YKR|1|A|A|729
2YKR|1|A|G|730
2YKR|1|A|G|731

Current chains

Chain A

16S RRNA

Nearby chains

Chain F

30S RIBOSOMAL PROTEIN S6

Chain O

30S RIBOSOMAL PROTEIN S15

Chain R

30S RIBOSOMAL PROTEIN S18

Chain U

30S RIBOSOMAL PROTEIN S21