HL_2YKR_017

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2YKR|1|A|G|786
2YKR|1|A|A|787
2YKR|1|A|U|788
2YKR|1|A|U|789
2YKR|1|A|A|790
2YKR|1|A|G|791
2YKR|1|A|A|792
2YKR|1|A|U|793
2YKR|1|A|A|794
2YKR|1|A|C|795
2YKR|1|A|C|796

Current chains

Chain A

16S RRNA

Nearby chains

Chain K

30S RIBOSOMAL PROTEIN S11

Chain W

PUTATIVE RIBOSOME BIOGENESIS GTPASE RSGA