HL_2YKR_035

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

2YKR|1|A|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2YKR_035 not in the Motif Atlas

Homologous match to HL_6CZR_080

Geometric discrepancy: 0.5656

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

2YKR|1|A|C|342
2YKR|1|A|U|343
2YKR|1|A|A|344
2YKR|1|A|C|345
2YKR|1|A|G|346
2YKR|1|A|G|347

Current chains

Chain A

16S RRNA

Nearby chains