HL_2ZJP_002
3D structure
- PDB id
- 2ZJP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CUGGAGAUACG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_2ZJP_002 not in the Motif Atlas
- Homologous match to HL_7A0S_002
- Geometric discrepancy: 0.2558
- The information below is about HL_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_76590.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
2ZJP|1|X|C|85
2ZJP|1|X|U|86
2ZJP|1|X|G|87
2ZJP|1|X|G|88
2ZJP|1|X|A|89
2ZJP|1|X|G|90
2ZJP|1|X|A|91
2ZJP|1|X|U|92
2ZJP|1|X|A|93
2ZJP|1|X|C|94
2ZJP|1|X|G|95
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain Q
- 50S RIBOSOMAL PROTEIN L23
- Chain R
- 50S RIBOSOMAL PROTEIN L24
- Chain V
- 50S RIBOSOMAL PROTEIN L29
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