HL_2ZJP_006

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AAACAU

Length

6 nucleotides

Bulged bases

2ZJP|1|X|A|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_006 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3564

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

2ZJP|1|X|A|172
2ZJP|1|X|A|173
2ZJP|1|X|A|174
2ZJP|1|X|C|175
2ZJP|1|X|A|176
2ZJP|1|X|U|177

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain I

50S RIBOSOMAL PROTEIN L15

Chain U

50S RIBOSOMAL PROTEIN L28