HL_2ZJP_018

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

2ZJP|1|X|A|625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_018 not in the Motif Atlas

Homologous match to HL_7A0S_019

Geometric discrepancy: 0.2633

The information below is about HL_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

2ZJP|1|X|U|622
2ZJP|1|X|G|623
2ZJP|1|X|A|624
2ZJP|1|X|A|625
2ZJP|1|X|A|626
2ZJP|1|X|A|627

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L4