HL_2ZJP_025

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GCUAAAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_025 not in the Motif Atlas

Geometric match to HL_4V88_194

Geometric discrepancy: 0.3816

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

2ZJP|1|X|G|888
2ZJP|1|X|C|889
2ZJP|1|X|U|890
2ZJP|1|X|A|891
2ZJP|1|X|A|911
2ZJP|1|X|A|912
2ZJP|1|X|A|913
2ZJP|1|X|C|914

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain J

50S RIBOSOMAL PROTEIN L16

Chain S

50S RIBOSOMAL PROTEIN L25